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                                            Santosh Kumar G

nonpareil alignment version can't use fastq files

There is a problem with nonpareil alignment version. It can't use fastq files. It will go through the whole code. But, it will output files with all zeros. [SRR096387_1.npo.txt](https://github.com/lmrodriguezr/nonpareil/files/376416/SRR096387_1.npo.txt)

bug