Dailu Guan
Dailu Guan
Indeed, UCSC does not update it yet. We are looking for a brower platform that can visualize multi-omics data. Thanks so much!
Really thanks for your help, Daofeng! The fastq is correct and I preferred to chromosome name only with numbers, e.g. 1, 2,3… thanks again!
Thanks you so much! By the way, a better genome assembly name is: GRCg7b.
I test the version: python --version Python 3.8.13
The installed pysam is: pysam bioconda/linux-64::pysam-0.9.1-py38hd1a2d5f_10 Then I try to install a higher version: conda install -c bioconda pysam=0.16.0.1 Unfortunately, there are a lot of conflicts: Found conflicts! Looking for...
> Thank you so much! It also works me!
I install the tool using conda, it works before. Now it seems to have some issues. My command is: parallel-fastq-dump --sra-id SRR10024973 --threads 4 --outdir out/ --split-files --gzip The error...
I install the software using conda, so how i can update this within conda env?
Finally, "conda install -c bioconda sra-tools=2.10" works.
My installation steps are: conda install -c bioconda parallel-fastq-dump -n parallel-fastq-dump -m conda install -c bioconda sra-tools=2.10 -n parallel-fastq-dump To use it: conda activate parallel-fastq-dump parallel-fastq-dump -h