grandrea
grandrea
you can change the number of threads used by jackhmmer by increasing the number of cores here https://github.com/deepmind/alphafold/blob/c42a96f3a5b6179484b5f0b936e3dd0c9b08fde1/alphafold/data/tools/jackhmmer.py#L38 . It is 8 by default, you can increase this number. Disclaimer:...
@jkosinski could you share how to edit the AlphaFold hh-suite call here to prevent this error?
thank you!
thanks- d you have some steps so that I can compile from source (I see it is not as simple as dotnet restore) or should I just wait for a...
Hi, I can reproduce the error - the .skyline.speclib file one selects to import does not contain a column called Global.Q.Value that Skyline expects. See my error report here https://skyline.ms/announcements/home/support/thread.view?rowId=69554...
Thank you- yes, I have asked the skyline team in the forum post I linked. I am just opening skyline and trying to import DIA results from dia-nn following their...
this doesn't work but for stupid reasons related to IT blocking us from executing .bat files. good stuff. thanks for the help though!
Hi, I got it to work. dia-nn exports report.parquet report_speclib.parquet (whatever you choose to name the experimental speclib) report_speclib.parquet.skyline.speclib (this file has the same root name as the speclib not...