gpcr

Results 13 comments of gpcr

how to run PCA including all chromosomes at once?

@bwlewis : thanks for the follow up i will look Fwd to it...Happy thanks giving!!!

how to run PCA including all chromosomes at once?

@bwlewis: Gentle followup to see if you have update on this, thanks

how to run PCA including all chromosomes at once?

@bwlewis : Gentle followup -2 to see if you have update on this, thanks

how to run PCA including all chromosomes at once?

Thanks !!!! I will try to implement on 51K sample size exome data ...will let you know how it goes. and also it will be great if you can compare...

Enhancement request: I$* to print all INFO fields

any update? thanks

error with dbNSFP_GERP++ info fields

Thanks @mdshw5 for the comment: Error persists even trying I$dbNSFP_GERP\+\+_RS to over come Awks natural behaviour.

error with dbNSFP_GERP++ info fields

thanks for your responses: I too prefer option one Feature request:Can you please make an option for "Flag"ged info fields with no value just the tag For example: ##INFO= ##INFO=...

python wrapper is slower than straight awk

Thanks for creating and excellent tool; Is it possible to add a feature that affect all samples : ex: '{ if (I$AF>0.5) print $1,$2,$3,I$AN, $ALL_SAMPLES_section }' PS: if VCF has...

python wrapper is slower than straight awk

It is very well acheived by regular awk and/or piping to post process...Combination of selection of info fileds and sub fileds of every sample information like GT etc directly though...

python wrapper is slower than straight awk

@cc2qe : thanks working great