Jinwen Zhang comments

Results 8 comments of


                                            Jinwen Zhang

duplicate reads in the count matrix with difference expression value?

Hi, @mathavanpu Has the problem been solved? I‘m very concerned about this as DCC is the main part in my analysis workflow.

duplicate reads in the count matrix with difference expression value?

Generally rRNA-deleted library or rRNA-deleted & RNase R. Actually, I doubt these duplicates represent circRNAs in positive and negative strands seperatly.

Question about circFilter.py

Hi, @tjakobi , I'm stuck with the same part. My error information is as follows: ``` Filtering by read counts Count CircSkip junctions Traceback (most recent call last): File "/usr/bin/DCC",...

Question about circFilter.py

@JunmingH Thanks. It's a genome of Hepatitis B virus and there is no information in UCSC.

Question about circFilter.py

Thanks, it is indeed a problem of GTF.

diffSplice error，a classic one: 'UnboundLocalError'. I have tried my best.

Hi, thanks for your reply. Actually for both. Originally, I intended to upload the file, but it's too large.

diffSplice error，a classic one: 'UnboundLocalError'. I have tried my best.

Thanks. I used `conda install`.

are there local databases like 'org.Hs.eg.db' for search

Thanks for the solution. Actually the connection is OK recently. I'd be very honored if there has a local copy.