Geoff Nelson

icon indicating a website link https://ntc.hms.harvard.edu/

icon company Harvard Medical School icon location Boston, MA icon location bioinformatics @AdelmanLab

Results 6 comments of Geoff Nelson

CredentialsError during data set upload (ISA-Tab)

Issue is AWS credentials currently time out after 1 hour and the data set (50-60GB) generating this issue requires > 1 hour to upload. As a temporary solution for the...

Data-Set 2 Node Selection Popover

I also prefer A. If we go with A, do we still want to provide input group toggling at the bottom of the pair popover? Or should we make group...

Import Isatab Error - Field limit on Study Identifier

@jkmarx This is the error message: ![image](https://user-images.githubusercontent.com/23487494/55807590-767a9600-5ab0-11e9-9eb6-890472cf49bd.png)

Hint reference and background files not available anymore.

The README links have been corrected and the reference files now live here: http://compbio.med.harvard.edu/hint/

We really want "padj" or "fdr", not just p-value

@mccalluc Sounds good. Even if "fdr" is used, I still don't think we'd see more than 1 of these terms used in a given output. So I wouldn't worry about...

revisit naming of "sample-by-sample"

@mccalluc Yes, "sample-by-sample" seems clear to me. For consistency, I might change the PCA header from 'Conditions' to 'Samples' since replicates can share the same Condition but each is a...