glzhang90095

Hi Dylan @Dylan, Forgive me for bringing this up again. I followed your suggestions: merge the sections with each barcode prefixed with the condition, and **run.CSIDE.single** to get the differentially...

Hi [DanielZucha](https://github.com/DanielZucha), [rpisalive](https://github.com/rpisalive) Did you fix your issue? I had the similar problem since I updated the latest version, 2.2.1. I just don't know where to insert the following code...

@rpisalive Thanks for your quick response! I followed your suggestion and added the following setting between "run.RCTD.replicates" command and "run.CSIDE.replicates" command, and it worked! [email protected][1][[1]]@config$doublet_mode = 'full' [email protected][2][[1]]@config$doublet_mode = 'full'...