Giovanni Palla
Giovanni Palla
just tried solution provided by @btlorch and seems to work well. I think it would be useful to document this somewhere in docs? @st-- saw the good first issue tag,...
these are unique integers for segmentation masks, you can check with this: ```python img["segmented_watershed"].as_numpy() ```
@Koncopd is working on them!
@SabrinaRichter https://leidenalg.readthedocs.io/en/stable/reference.html#leidenalg.find_partition_multiplex
Still mixed feelings about this, let's keep it open
related to #246 and https://github.com/theislab/scanpy/issues/1818
I'm still quite tempted to add this although only use case I see is when the spatial graph is not a grid (but has some interesting topology). also, this should...
mmh that could also be a way to do it but in theislab/scanpy#1818 the idea is to do multiplex partitioning with the knn from gexp and spatial graph jointly (without...
that's really cool @ivirshup ! it'd be a very handy function. re 2. , I think it's still be useful and would be a purely "data driven" (not necessarily better)...
good point. The problem is that there are many parameters that shouldbe exposed, since if true it's a simple function, it wraps quite complex processing steps (where it's key that...