ghm17
ghm17
The selene version is 0.5.1.
Hi Kruthika, Thanks for using our tool! LOGODetect is designed to analyze two traits because (local or global) genetic correlation is defined over two traits. However, one can still anlayze...
Hi Kruthika, LOGODetect currently can analyze one trait between 2 populations on each run. For analysis across more than 2 populations, say 4 in your case, you can supply 2...
Thanks for using our tool! Can you try running with fewer cores, like 5, with argument `--n_cores 5` ?
It may happen if memory is out and some parallel jobs have died. You can also try running 25 cores with larger memory. Hope it helps!
Thanks for your interest in using our tool! Please try the following command to download the reference dataset: ``` wget -O LOGODetect_data.tar.gz ftp://ftp.biostat.wisc.edu/pub/lu_group/Projects/LOGODetect/LOGODetect_data.tar.gz tar -zxvf LOGODetect_data.tar.gz ``` I successfully downloaded...
LOGODetect does not calculate heritability itself, instead it applies LDSC to do so and uses the estimated heritability to construct the null distribution of scan statistic.
We have just updated the software to enable single population analysis for EAS/AFR/AMR/SAS. You can specify the population with the flag `--pop POPULATION`. Please let us know if you have...