Graham Heimberg

icon indicating a website link www.grahamheimberg.com icon indicating an email [email protected]

icon company Broad Institute icon location postdoc in Aviv Regev's Lab, Broad Institute of Harvard and MIT

Results 2 issues of Graham Heimberg

log1p warns adata.X is logged when it may not be (when other layers are logged)

5 comment

When I use `sc.pp.log1p(adata)` and then `sc.pp.log1p(adata, layer='other')` it warns me that the data has already been logged even though I am logging a layer as opposed to adata.X. Would...

Bug 🐛

better error messaging for concat

1 comment

Hi, I recently got stuck using the anndata concat function and it took me a while to realize that adatas with duplicated gene names cause an error. I thought it...

topic: error messages 🤬