Giorgos Lazaridis
Giorgos Lazaridis
All of the above operations should be done in the tractography.py file right?Also, in the WMQL documentation, only the support for VTK file format is mentioned i.e "A full-brain tractography...
I also saw that the Nipy code is available in Github so the .tck functions needed to do the job are already implemented.
Of course I am willing to contribute as long as we can do it together so as to learn and at the same time improve the software for everyone. :)
So, to sum up, by using the TractConverter to do the conversion .tck->.trk would be more than enough for using the tracts in Tract_querier, right?
Perfect. Thank you all @demianw @mdesco @MarcCote. I will let you know as soon as i can.
Results in track conversion from Mrtrix3 format .tck to .vtk are perfect. After the conversion, I check if the output is similar with the input with: np.all([np.array_equal(trk_tracks, vtk_tracks) for trk_tracks,...
i think that since code for conversion from one format to another exists, I find no reason for tract_querier not to incorporate direct Mrtrix (.tck) format reading and an option...