Steve Moss

@wvmarle I'm very interested in this! How mature is this code now? I'm happy to test stuff! The uni I work for have a 10Gbps link I can test pushing...

Even though I updated to the latest Helm chart version targeting Loki 2.9.3, I had to make a change in the values.yaml to set the image tag for Loki, as...

Looks like its due to a change to a new packer API? Code here needs modifying to work with the changes to the packer code. Packer is pre-v1 release, so...

Looks like this supports v0.8 packer API https://github.com/amitinfo2k/packer-post-processor-ovftool? Thought not sure its fully developed yet? @amitinfo2k

It seems that a number of the tests fail because the returned content can be slightly different. For example the order of a json or xml dict might change. Testing...

I just hit this issue also. Had to do a `terraform destroy` followed by a `terraform apply` to resolve.

+1 to this! Need some test data for a homebrew-science formula I've been working on anyway, so will try kill 2 birds with one stone :smile: See https://github.com/Homebrew/homebrew-science/pull/2300. **UPDATE**: I've...

I notice that `topInsert` is assigned as `smids[top]` in the code (where `top` is the indices of the maximum values in the histogram). In tracing this issue back I took...

I printed `bamBase`, `seqInfo` and `readPairs` and get the following: ``` pb_to_pb_blasr {'scf7180000000002|quiver': {'length': 5350059}} {'scf7180000000002|quiver': {'start2': array([], dtype=float64), 'start1': array([], dtype=float64), 'stop1': array([], dtype=float64), 'stop2': array([], dtype=float64)}} ```

Debug output here: ``` [smoss@biolserva pb_pbalign]$ hagfish_extract -vvv ../pb_to_pb_pbalign.bam HAGFISH INFO processing bamfile pb_to_pb_pbalign HAGFISH DEBUG get sequence info from ../pb_to_pb_pbalign.bam HAGFISH INFO Reading cached seqInfo for pb_to_pb_pbalign HAGFISH INFO...