niklas breitenbach-netter

Results 27 comments of niklas breitenbach-netter

Hi, thanks for your reply, but I already started writing somethink on my own. I actually just want to create a mask for a polygon, that is defined by a...

Hi, I just stumbled upon this issue. Therefore, I wanted to ask if there is any progress on this, or a better workaround than rewriting manually the generated svg file....

Hi, I am trying to use PAMAuthenticator with a non-root user JuypterHub controlled by systemd on CentOS 8. Since I am going to spawn singleuser servers with podman, I need...

Ok, I took on my own way: 1. in my oppinion the pam_open_session call should definitely be made by a child of the JupyterHub process, since depending on the PAM...

Hi, I worked it out now: I added a set_preexec_fn routine to spawners. It is called by the authenticator on pre_spawn_start and sets a preexec_fn for the spawner. When the...

Hi, I think I really would like this enhancement to be available. I have several huge nd2 files (> 100 GB) consisting of large overview stitched images (7117 x 21044...

I would like to try out the `.read_frame()`. Could you help me in determining the correct frame numbers? `nd2_file.sizes` gives `{'T': 30, 'P': 5, 'C': 2, 'Y': 21044, 'X': 7117}`.

@tlambert03 thanks a lot. A preliminary test in my code shows that it is way faster that way!!!

What exactly would be needed to make the dask interface able to use the chunking? Wouldn't it just need an intermediate function that relays to the `.read_frame()` function?

Hey @tlambert03 I have one more question when using `.read_frame()` for timeseries. I want to extract the same xy crop for all timepoints, so I use the following: ``` timestack_...