Peiyuan Zhu
Peiyuan Zhu
My PLINK2 should be the latest stable version: alpha 2.3
I think it'd be great if there is an option load a matrix from readBGENToMatrixByRange indexed by rsid instead of position.
Missing data imputation can be an important feature to have. I wonder how missing genotype is handled in the current version.
I'm seeing this loop ``` pve
But would that come at a cost that varbvs approximation becomes inaccurate?
R just quit abruptly. Not sure exactly the kind of error.
`bgenix -g xxx.bgen -index -clobber`
-clobber overwrites the existing file if exists. I've sent you my bgi file through email. Thanks!
``` > db_con RSQLite::dbListTables(db_con) character(0) > dplyr::tbl(db_con, "Variant") Error in `db_query_fields.DBIConnection()`: ! Can't query fields. Caused by error: ! no such table: Variant Run `rlang::last_trace()` to see where the error...
Is it because I'm using the CRAN version?