ftlbiped

Improve error for esm-1v contact prediction regression weights. Remove warning, but raise when `return_contacts=True`

1

When running variant-prediction/predict.py, I am given a warning: ``` ~/pkg/esm/esm/pretrained.py:150: UserWarning: Regression weights not found, predicting contacts will not produce correct results. ``` When I set a trace at that...

Type error in optimize_embedding

3

When running `umap`, I get the following error: ``` Error in eval(ei, envir) : Not compatible with requested type: [type=character; target=double]. ``` I've traced this to `umap:::optimize_embedding`, but because I...

Feature request: hot spots and plate rifting

2

Right now there don't appear to be any mantle plumes or hots spots in the simulated tectonics. Hot spots: - create oceanic island chains, a very recognizable feature of earth's...