Francois

Results 14 issues of Francois

Apr 2023: * https://neuroimage.usc.edu/forums/t/the-way-to-conduct-wpli-for-unconstrained-source-maps/39512/2 Feb 2023: * https://neuroimage.usc.edu/forums/t/interpreting-amplitude-envelope-correlation-aec-values/37762 * https://neuroimage.usc.edu/forums/t/wpli-and-connectivity-metrics-validity-publishability/38842/3 * https://neuroimage.usc.edu/forums/t/eeg-model-evaluation-results/38876 July 2022: * https://neuroimage.usc.edu/forums/t/henv-error-when-using-new-aec-function-2022/36042 => Disable split option? June 2022: * https://neuroimage.usc.edu/forums/t/envelope-correlation-n-x-n-2020-dimensions-of-arrays-being-concatenated-are-not-consistent/30358/21 * https://neuroimage.usc.edu/forums/t/hilbert-envelope-correlation-about-assuming-measures-positive-in-bst-henv-m/35572/1 May 2022: * https://neuroimage.usc.edu/forums/t/error-refining-fem-mesh-using-iso2mesh-2021/35305...

question
tutorials

The pipeline currently described on the website is not giving acceptable results, and we could not publish any statistics at the group level in the recent Frontiers article. This needs...

bug
discussion
tutorials

There are many issues with the current dataset that we use for the OMEGA tutorial. ### Changes to the BIDS dataset - /derivatives/freesurfer: - Move the FreeSurfer folders to follow...

enhancement

bst_pac.m uses bst_bandpass_fft.m, which is not used anywhere anymore... And it uses a signal mirroring, which has proven not to help much reducing the duration of the edge effects. @SoheilaSamiee...

1) **SimNIBS**: Remeshing the SimNIBS model with iso2mesh doesn't work. Here is the error message: ``` FEM> 1. scalp: C:\Work\Protocols\TutorialFem\anat\Subject01\tess_scalp.mat FEM> 2. skull: C:\Work\Protocols\TutorialFem\anat\Subject01\tess_skull.mat FEM> 3. white: C:\Work\Protocols\TutorialFem\anat\Subject01\tess_white.mat FEM> 4....

tutorials

@jcmosher suggested we change the scaling factor applied in two functions: **1. Dipole scanning (not implemented)** https://github.com/brainstorm-tools/brainstorm3/blob/master/toolbox/process/functions/process_dipole_scanning.m#L124 `Factor = sqrt(DataMatP.Leff / sResultP.Leff);` Replaced with: `Factor = sqrt(sResultP.Leff);` Problem: When testing...

bug

The tutorial "Source estimation" lacks some details and links. Please review all the sections tagged as TODO. https://neuroimage.usc.edu/brainstorm/Tutorials/SourceEstimation Some additional things are listed in here: https://neuroimage.usc.edu/brainstorm/Tutorials/Review (when they are addressed,...

tutorials

- Find a new emailing solution (via USC Exchange, or paid external SMTP server) - Add Discourse to the backup script on Neuroimage: (/etc/cron.weekly/backup_zombie.cron) - Folder: /var/discourse - Running Docker...

enhancement

This important question was raised in the forum: https://neuroimage.usc.edu/forums/t/display-dipoles-across-subjects-on-default-anatomy/9779/5

discussion

Proper import of BIDS-MEG datasets should use properly the field AssociatedEmptyRoom to match the MEG recordings with the corresponding empty-room measurements. This can be tested using these two datasets: https://openneuro.org/datasets/ds000247/versions/00002...

enhancement
tutorials