Francesco Tabaro

Cannot run SalmonTE in Snakemake pipeline

6

Hello, I get an error about locking the results dir when running SalmonTE in Snakemake pipeline. I forked the repo and got it to run by disabling SalmonTE directory locking....

Addresses #46

PEP validation and containerization result in invalid Dockerfile

2

**Snakemake version** Snakemake version 7.12.1 **Describe the bug** When using `pepfile` a progress line is printed to stdout. I guess it comes from `eido` or some other tool used to...

Hi, great simple app. I think it would be useful to save the current task if the app closes or if I shutdown/hibernate the computer and forget to stop the...

### Description of feature Hello, I would like to propose a module to plot consensus peak set. I find myself generating DeepTools heatmaps of the consensus peak set from nf-core/cutandrun...

Add missing quotes around configfile in unit test template

1

I think we miss double quotes around configfile path here: https://github.com/snakemake/snakemake/blob/1a9515a19cf9d207cddd772673c52457bdba9d67/snakemake/unit_tests/templates/ruletest.py.jinja2#L39