Shifang Li; [email protected]

icon location Genetics; multi-omics; system immunology

Results 4 comments of Shifang Li; [email protected]

Empty file output from pyscenic ctx using original/modified databases

> I am having a similar issue. I would appreciate it if a solution is given to this. Thank you! Hi, I face the same problem. Do you have some...

Seurat FindClusters() Error when running addDoubletScores() and addIterativeLSI() ----> no slot of name "i" for this object of class "Graph"

Hi, how it goes, did you solved the problem? I also faced the same problem for my dataset. Thank in advance.

Build the Axolotl cisTarget database issue

> ok，it‘s doesn't matter. When I ran `pyscenic ctx`,the input data format just as the previous said, but it also came out an error: ![image](https://user-images.githubusercontent.com/60514168/141930748-c0f8435e-f8b6-4947-bbb9-8b7a00cc8bf5.png) > > Why the `Signatures...

pig cisTarget database issues!

> You need to convert the HGNC gene symbols in `motifs-v9-nr.hgnc-m0.001-o0.0.tbl` to the pig gene symbols that are in your database. Thank you o much for the suggestion. I also...