freedomq8

Hello, i have the same error, however i am using the docker image due to epacts plots errors. is it possible to update the bug fix to the docker image...

Thanks for the quick response. The way I correct it is dividing 0.05/total number of variants and that would be the threshold. A follow up question; I want to do...

thanks for getting back to me. looking at the equation of the fisher test: Fisher_exact(num_var_alleles_case, num_var_alleles_ctrl, 2*num_gt_case, 2*num_gt_ctrl). its counting the number of variant alleles for both cases and control....

it would be a nice feature do include for mitochondria a multivariate regression for association test. Our station is doing this tests on R but i have to change the...

This is the vcf for the mitochondria variants called with varscan, gatk haplocaller, and strelka the have the same format of vcf. below a snp where some samples are wildtype,...

for example 1: if i need to change the forumla for haploid, what shall i change in the codes below ? `vtools update variant --from_stat 'total=#(GT)' 'num=#(alt)' 'het=#(het)' 'hom=#(hom)' 'other=#(other)'...

Regardin the regression test its Multivariate (adjusting for covariate i.e sex, age and haplogroups) logistic regression analysis. used in this paper (4th figure) https://www.researchgate.net/publication/230666692_Mitochondrial_DNA_Coding_and_Control_Region_Variants_as_Genetic_Risk_Factors_for_Type_2_Diabetes/figures?lo=1