Fredric Johansson

We have a similar problem with ImageJ not returning anything other than 0 on errors

The backtrace is unfortunately not very helpful since it doesn't show the call from mydumper. You need to build mydumper with debugging symbols and make cmake not strip the executable...

I'm guessing you don't want to send the logs for various reasons. I don't know how many schemas you have there but it would be helpful if you could try...

what if you do: "p *database" to print the whole structure you can use generate-core-file inside gdb to create a coredump if you need to close the gdb session

The relevant news item: https://www.uniprot.org/release-notes/2022-08-03-release This affects us as well so I looked at fixing this. The naive fix is to add ligand, ligand_id, ligand_label and ligand_label as the keys...

The current feature parser also misparse the feature when the unknown key is after a known key: ``` FT TURN 159..161 FT /evidence="ECO:0000244|PDB:2O7A" FT HELIX 162..164 FT /evidence="ECO:0000244|PDB:4ARJ" FT /ligand="ECO:000024"...

I was thinking something along those lines. I guess we could match on "^/[a-z_]+=" I was trying to figure out a better way that doesn't silently accept input it is...

The result from the template search is actually saved. The issue is, like @yamule is pointing at, that the code doesn't check whether the output file already exists. In our...

This is a list of all base colors currently used by Trello, taken from a board export: - green - yellow - orange - red - purple - blue -...

> > I want to know if this error could influence the outcome of the prediction or just let the jackhmmer step to be slow > > it just let...