Zhangming Yan

I just went through the tutorial 3 on a fresh machine again and didn't encounter any problem. I tried to reproduce your problem by setting some incorrect configurations. Although I...

@HHG-biocode It's hard to reproduce and diagnose your problem if you are not using the standard GIVE-Docker. Because the dependent software and system environment might be totally different. Hence, I...

We didn't encounter this problem before. Could you please show us the screenshots of your problem? Could you share your sample data with us? Maybe we can have some test.

The bin size is a required parameter for HiC data processing. It determines the resolution of Genomic Interaction from HiC data. When you use hic2give to convert certain HiC interaction...

Thanks. By the way, will the cooler Schema V3 non-symmetric matrix be supported by HiGlass in the next release? Current HiGlass version cannot correctly display the non-symmetric matrix generated by...

I saw a new HiGlass release. I tried it. It's great that it supports asymmetric mcool file generated by cooler v0.8.5. However, the problem of heatmap orientation still unsolved. In...

Hi, the 4DN DCIC is implementing iMARGI RNA-DNA interaction mapping pipeline in DCIC Data Portal. It also has Higlass visualization. For visualization consistency, I'd like to know the future plan...

Hi Peter, Thank you for your suggestion. The transpose option in the front end might be not necessary. I think we can solve the problem in the backend. In my...

Hi Nezar, That's great. Thank you. Looking forward to the update. Best regards, Frank

Encounter the same problem for nf-core/scrnaseq 2.1.0. Is there any fix for this problem?