Florian Plaza Oñate
Florian Plaza Oñate
I have the same problem. The file setup.py is missing in the swig/python directory
I am afraid I can't. I guess the entire package has to be rebuilt with autoreconf Meanwhile, you can use older versions of jellyfish
Hi @jakewendt , I have a similar issue. It appears that bowtie2 mixed-mode is disabled. According to the documentation "If Bowtie 2 cannot find a paired-end alignment for a pair,...
version 2.1.0 has the same behaviour on my side ``` $ bowtie2-2.1.0/bowtie2 -1 1.fastq -2 2.fastq -x GRCh38_noalt_as/GRCh38_noalt_as -p 32 -S /dev/null 3 reads; of these: 3 (100.00%) were paired;...
Thank you very much. This is will be very helpful.
Thanks. No improvements on my side. ``` $ bowtie2-bug_fixes/bowtie2 -U 1.fastq,2.fastq -x GRCh38_noalt_as/GRCh38_noalt_as -p 32 --no-unal --no-sq --no-hd -S /dev/null 6 reads; of these: 6 (100.00%) were unpaired; of these:...
Hello @ch4rr0 , Any news about the investigation of this issue? Thanks
Hi, I have the same problem. The "prefilter" step takes a lot of time. More precisely, the CPU usage is very low and RAM usage increases then decreases in cyclic...
Hi Donovan, Thanks for your feedback. I have no clean code ready for a PR but I may work on it. Here is what I performed so far: 1. Match...
This PR should fix this: https://github.com/bioconda/bioconda-recipes/pull/50564 I think that "-march=native" should be disabled to get a generic executable by default https://github.com/vcflib/vcflib/blob/382ae661fa19cfde6de56a8b3d7109d542373345/CMakeLists.txt#L73C20-L73C33