Ruslan Forostianov

Chart gets blank after changing the type of the clinical attribute

1

Steps to reproduce: 1. Load a study with a clinical attribute of the "STRING" type. 2. Go to the summary page of the just-loaded study and change the chart type...

**Note**: You can only reproduce this bug if you do not specify `Accept` in the HTTP header. The following call works as expected: ``` curl 'https://www.genomenexus.org/ensembl/canonical-gene/entrez/345' ``` It returns `application/json`...

Dockerize civic application

14

Hi there, I could not find a Dockerfile in this project nor a repository that would build docker images in the git organisation. Is it already implemented somewhere? If not,...

Refactor SessionServiceController to reuse some of the SessionServiceRequestHandler methods.

4

Proposed here: https://github.com/cBioPortal/cbioportal/pull/10829#discussion_r1662354069 `SessionServiceRequestHandler` is an HTTP client that talks to the session service. It has all low-level HTTP code to interact with the session service. `SessionServiceController` is doing the...

RFC83: Add admin call to make virtual study available for all users on their landing pages

7

Fix # (see https://help.github.com/en/articles/closing-issues-using-keywords) Describe changes proposed in this pull request: - Introduce an admin call, secured by a secret key, to publish virtual studies for all users, making them...

Remove possibility to create a Virtual Study by anonymous user

3

This feature makes the system vulnerable to DoS attacks. Frontend: disable the button for anonymous users. Show popup "You have to Login to create a Virtual Study" Backend: These 2...

See also [RFC84](https://docs.google.com/document/d/1bOIeLJ44r9h3m6dB390kQ_SAAn69KKxYwFTYBTy5-cI/edit) and [respective code changes in PR 46](https://github.com/cBioPortal/cbioportal-core/pull/46)

Please merge this one only when [rfc79](https://github.com/cBioPortal/cbioportal-core/tree/rfc79) branch of `cbioportal-core` merged to `main`. See [respective code changes in PR 48](https://github.com/cBioPortal/cbioportal-core/pull/48)

Study Summary Page Fails for Shared Virtual Study with Protected Samples

3

When a virtual study is created using samples from a private study and shared with another user who does not have access to the original private study, the user who...

The `MUTATION_UNCALLED` file type is supported in [the code](https://github.com/cBioPortal/cbioportal/blob/2cdd21704156f9bb54f8b67e891453094692c830/src/main/java/org/cbioportal/model/MolecularProfile.java#L14), but it is not documented anywhere. This ticket is for adding a section about this file type to the following page:...