Florian Deckert

I had the same problem but when adding the CellChatDB and run subsetData() on the individual samples first it works e.g. there are genes in the [email protected] slot. However, to...

Getting the same error.

I have the same problem (R 4.1). I want to convert the output from scvi to Seurat. Convert gets everything done but fails with the error from above when trying...

Many thanks for your dedication @sqjin, it works with the last update!

Hi, many thanks for your tool! I hope it is okay to add the information that scvi-toools implemented Solo as an external tool with a short help page. Maybe that...

Hi @hxj5, Many thanks for your help. The AD, DP, and OTH matrix can be used to compute the REF, ALT, and OTHER frequency. But the annotation of the matrix...

Dear @hxj5, I was on vaccation last week, sorry for the delay. Many thanks for the detailed answer that is very helpful! I managed to write a script that sorts...

Dear @hxj5 and @huangyh09, Many thanks for helping me with this issue and related #90 #62. I wrote a script to convert the cellsnp output to vatrix format and filter...

Dear Yuanhua, Many thanks for your help! I set the following [line](https://github.com/single-cell-genetics/vireo/blob/3ffda356fdc30b4dd9fc3c67503c856c4e89a9d6/vireoSNP/utils/variant_select.py#L55) to return idx instead of idx_use and adusted the file output writer. I get a list of variants...

Hello Yuanhua, many thanks! For completion, I forked the repository and [documented](https://github.com/single-cell-genetics/vireo/compare/master...flde:vireo:master) documented all changes. To be honest, I still don't understand the while loop. You wrote, each iteration will...