Florent Lassalle

this is relevant as this can be used to specify the paprameters of the ascertainment bias correction in the Stamatakis model of RAxML and RAxML-NG (see https://github.com/amkozlov/raxml-ng/wiki/Input-data#evolutionary-model), which also uses...

Hi Carlos, thank you for reporting this. i fixed the building of the R package `topGO` by adding the `gfortran` deb package to the Dockerfile recipe (fixed in `[master]` 55e275b...

Hi Carlos, thanks for reporting this error. I don't think it has anything to do with your data not having any GO ids tagged on its genes (would be really...

OK, thanks. Actually, can you copy-paste the logs you have got for task 08 with the last run of the pipeline? There is something wrong showing in the logs above...

Thank you for this. I made an attempt fix in 0967741 and 5d8f32d that should be available soon as dockerhub builds; it's only an update in the pipeline code so...

Hi Carlos, Thanks for the above, we're closing in on the problem. it seems the SQL queries are what they should be, but still not yielding the expected output, so...

Going back to your previous posts, I have the impression that we're still on the same issue as in #39 and that it was not solved then. Can you confirm...

OK so it seems that the problem is indeed that you don't have any reconciliation data from step 07, and that probably stems from a deeper problem with the scripts...

OK the good news is that you do have the reconciliations. the annoying news is that there must be something broken in the code if it does not work from...

Hi Carlos, it seems we have a complex issue here with mutiple sources. I'm still at loss why the environment variable `${collapsecond}` is not loaded in task 6 or possibly...