Linda Smith

FileExistsError: [Errno 17] File exists: './dramv-annotate' when specifying output dir

8

An error is being thrown when I specify the output dir when the folder exists. `DRAM-v.py annotate -i /backup/user_data/linda/f_dynamics/vs2-pass2/final-viral-combined-for-dramv.fa -v /backup/user_data/linda/f_dynamics/vs2-pass2/for-dramv/viral-affi-contigs-for-dramv.tab -o ./dramv-annotate --skip_trnascan --threads 10 --min_contig_size 1000` ``` File...

final-viral-boundary.tsv and final-viral-score.tsv have different number of contigs/seqnames

2

Hi I'm just wondering why there would be less contigs appearing in the final-viral-score file (9808) as opposed to 12113 in the final-viral-boundary file? Can I include with confidence that...

Where to download files needed for --data-dir parameter

1

I just downloaded virsorter through setting up a conda environment. However I cannot find anything in the documentation stating where to get the files needed to pass to the `--data-dir`...