Flavio Lichtenstein

Getting problems with examples (pybel)

1

Trying to reproduce the examples, I'm finding some problems: response = requests.get('https://raw.githubusercontent.com/pharmacome/knowledge/master/hbp_knowledge/albuquerque2009.bel.json') graph = pybel.from_json(response.json()) >> module 'pybel' has no attribute 'from_json' I installed it this way: !pip3 install git+https://github.com/pybel/pybel.git...

other incompatibilities

1

next, I found incompatibilities running import SqlAlchemy and Pybel how to fix pip3 uninstall purge sqlalchemy python3 -m pip install SQLAlchemy==1.3.0 python3 -m pip install seaborn python3 -m pip uninstall...

could not install pathme, and I found a solution

1

Possibly, pathme (and viewer) cannot be installed with python 3.8 or greater. Perhaps due to 'compath'. I tried in many ways and did not find a solution. Looking at the...

[BUG]: installing biocypher with Poetry -> error: The Poetry configuration is invalid: - project must contain ['name'] properties

6

### Source conda ### other source _No response_ ### Python version 3.11 ### BioCypher version version = "0.9.3" ### OS platform and distribution Linux Mint 22 ### Describe the bug...