John Dey

how to install packages globally

5

- Packagemanager command seems to work for installing packages. The packages visible in the file system at $BEAST_LIB packagemanager -add SSM -dir $BEAST_LIB - but after the package install, Packagemanager...

BWA compile fail with GCC 10

6

GCC 10 defaults to -fno-common which is causing this issue. ld.gold: error: ./libbwa.a(rope.o): multiple definition of 'rle_auxtab' ld.gold: ./libbwa.a(bwtindex.o): previous definition here ld.gold: error: ./libbwa.a(rle.o): multiple definition of 'rle_auxtab' ld.gold:...

The above error happens during install of chromVar with BioConductor 3.11 and S4Vectors 0.26.1 elementLengths has been removed from BioC DEPRECATED AND DEFUNCT -- - Remove elementLengths() (was defunct in...

{bio}[gompi/2021b] HH-suite v3.3.0

6

(created using `eb --new-pr`)

CRAN

3

this package should be in CRAN

To promote reproducible science, could you please use git tags. Creating a tag also creates a release for your project. We require tagged releases when building scientific software. Pulling from...

GRIDSS

2

(created using `eb --new-pr`)

spektral 1.1.0

5

(created using `eb --new-pr`) - [x] #14990

{bio}[foss/2020b] Trinity 2.12.0

3

(created using `eb --new-pr`)