Colocalisation_Analysis
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fiji
Fiji's plugin for colocalization analysis
I have the two channels open and have selected to return the pdf and other data. The program runs to step 2/11 and then stops.
Hello, I have a simple question regarding the "Coloc 2" plugin in FIJI. Assume I have two images named "tmp0" and "tmp1", when I use the Coloc2, even though I...
When running Coloc 2, the 2D Intensity Histogram, as well as any other images in the dropdown menu (channel 1 max projection, etc.) show up as black images. If I...
Randomization occurs over the bounding box of the ROI regardless of which selection method is used (normal ROI, mask, or ROI manager). This can have a significant difference on the...
Summary: If a script uses Colocalisation_Test, and closes the result window, subsequent attempts to run Colocalisation_Test will crash because the reference to the window will still be there, but the...
Hi, you can reproduce my issue by creating two new (identical) images of type float, then run Coloc 2 on them. What I'd expect is a diagonal line (since it's...
Running as macro need a method / GUI parameter to make the PDF file output saved without user interaction, since right now OK must be clicked... not sure how to...
We want to expose colocalisation functionality in [ImageJ Ops](https://github.com/imagej/imagej-ops). This way individual algorithms can be reused in other contexts (e.g. KNIME), and traditional ImageJ/Fiji functionality will benefit from Ops extensibility.
Hi I am forking the repo and am aiming to implement the possibility to add a manual threshold to the images. The Autothreshold method is not useful in a lot...
Consider scraping Masks concept from Plugin code and rely solely on ImgLib2 native support for RandomAccessibleIntervals. Source images can come in 'masked' or not... just lean on ImgLib2.
