Marcus Fedarko

Results 292 issues of Marcus Fedarko

Steps to reproduce: 1. While logged in to Qiita, open https://qiita.ucsd.edu/study/description/10283 2. In the Data Types section, click on "Metagenomic", then click on the "ID 4953" public prep 3. The...

While I was running Empress to generate an Empire plot (just using the [normal moving pictures data](https://github.com/biocore/empress/blob/df3a4da5a5b23d465937112dfa2050f8957bb0ed/Makefile#L62-L78)), I kept getting this error: ``` Traceback (most recent call last): File "/home/marcus/Software/miniconda2/envs/qiime2-2021.2/lib/python3.6/site-packages/q2cli/commands.py",...

bug
packaging

From https://github.com/biocore/empress/pull/319: > > ### Problem 2 > > I sometimes get an error in the console that `THREE.DirectGeometry: Faceless geometries are not supported.` I can only seem to reproduce...

From https://github.com/biocore/empress/pull/319: > > ### Problem 1 > > When certain fields are selected as the `trajectory` / `gradient` in Emperor, I see an `Uncaught TypeError: Cannot read property 'value'...

Non-continuous colors are listed in ascending order (low -> high), while the gradients for continuous colors are listed in descending order (high -> low). ![image](https://user-images.githubusercontent.com/4177727/90555087-b002ed00-e14b-11ea-94f3-f8533a1de591.png) ![image](https://user-images.githubusercontent.com/4177727/90555093-b1ccb080-e14b-11ea-9285-a9e0bf59fc41.png) It'd be nice to...

Closes #753 and closes #604. This PR adds a small lightbulb icon in the top-right corner of the display, directly to the left of the "More Options" button: ![image](https://user-images.githubusercontent.com/4177727/83339265-f2b9d500-a280-11ea-87f4-e8d16434a8d6.png) On...

This would be a single button accessible in the UI that does the following things: - changes the plot to 2D - changes the background to white - changes sample...

enhancement

## Summary Currently Emperor only allows use of the "Continuous values" color gradients when there are at least two numeric values in the current metadata field. As a maybe far-out...

GUI
group discussion

Noticed while working on #521 -- [this particular test](https://github.com/biocore/empress/blob/bf6f755c5187e543ff13c2c624b153fb97918b23/tests/test-barplots.js#L353-L359) was failing (it was expecting `216` coordinates, but only saw `72`). Adding log statements during debugging seemed to cause the test...

bug
testing

Just to track this as a separate feature, independent of #521. From @mortonjt in https://github.com/biocore/empress/issues/521#issuecomment-1128942024: > But I do want to note that discretizing colors in heatmaps is actually the...

feature request
barplots