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                                            Forrest Brennen

Merge Requests not building because Jenkins "Couldn't find any revision to build"

I had the same problem, however I was initially able to get merge requests to work using "refs/remotes[...]". I then tried modifying a few additional values to play around with...

ERROR:ont_fast5_api.conversion_tools.multi_to_single_fast5:Could not convert Multi->Single for file type 'single-read' with path

Hi @akk01 -- we don't currently have a good solution for when you end up with a folder of mixed single- and multi-read fast5 files, but we can put one...

ERROR:ont_fast5_api.conversion_tools.multi_to_single_fast5:Could not convert Multi->Single for file type 'single-read' with path

A good answer there -- we'll update our scripts to work on both file types anyways.

multi_to_multi_fast5

Hi @nick-youngblut -- you can do this with `fast5_subset`, though it will require you to give it a list containing all the read_ids you currently have (which I believe you...

fast5_subset take fastq as readID list

Ah, that's a good idea! We'll have a look.

Bulk fast5 recompression on MacOS

Hi @pre-mRNA -- bulk fast5 files are primarily intended for developers and for internal use. They aren't covered in ont-fast5-api for precisely that reason, and in a perfect world we...

demux_fast5 resume list

Hi @SkabbiVML --there is unfortunately not a terribly easy way to do this, but we will work on adding one. If you have some familiarity with manipulating tsv files, you...

Metadata from multifast5

Thanks for the suggestion @usamec -- we'll look at adding that.

--filename_base behaves differently in 'fast5_subset'

Hi @AAnnan -- thanks for letting us know. We'll have a look.

WARNING:Fast5Filter:xxx reads not found!

Hi @markme123 -- thanks for getting in touch. Can you please tell us: * The full command you ran. * Whether or not there is a particular pattern to the...