Felix Bemm

Hi Ryan, I am using filtlong extensively as pipeline component and really like it. For a fully fledged assembly pipeline I use it with the Illumina read option. Due to...

Augstus CGP stays empty if sequence file contains "-"

4

I am trying to run Augustus in CGP mode. One "species" contains a "-" in it's name. It looks like Augustus is not parsing this right when reading "speciesfilename". I...

[morecore] insufficient memory

10

Dear Heng, I am trying to build a rgfa from two large genomes (>10Gb). They are both finished down to chromosomes. I get the following output: ``` [M::main::23.960*1.00] loaded the...

Conda recipe

3

It would be great to have RaGOO on Conda/Bioconda. Makes it easier to use it in SnakeMake and allows for analysis versioning. Thx!

bcftools csq - GFF Format

9

Hi, could someone explain me why the feature type for a line in a GFF is not taken from the third GFF filed but `bcftools csq` expect each gene and...

Remove level 1 and level 2 las files

2

Is there a simple and automatic option to remove L1 and L2 las files after all sorts and merges are finished? Large genomes, lots of coverage (240x) with Sequel data...

Hey, is there a way to easily suppress display of empty beans that are created when multiple categorical variables are used and they do not exist in all subset alike?...