fbastian
fbastian
Taxon constraints are not present in all files. For instance, there is no "only_in_taxon" relations in ext.obo, but they are present in ext.owl. Also, I noticed some variations in the...
The following GCI relations seem incorrect, and generate cycles: ``` [Term] id: UBERON:0000074 name: renal glomerulus is_a: UBERON:0005325 {gci_filler="NCBITaxon:7954", gci_relation="part_of"} ! mesonephric glomerulus [Term] id: UBERON:0000045 name: ganglion is_a: UBERON:0003338...
I think that since the update to OWLAPI 4, methods such as `getAllOWLClasses` also return xrefs, am I correct? Then it would be handy to have a method similar to...
Why adding a method `owltools.graph.OWLGraphWrapperExtended#getOWLClassByIdentifierNoAltIds(String)`, while it could have been handled directly in `owltools.graph.OWLGraphWrapperExtended#getOWLClassByIdentifier(String, boolean)` (the boolean argument was exactly for this)
rcaller code makes the Thread to wait/sleep at some points (which is fine). The problem is that, if the Thread was interrupted, these methods throw an `InterruptedException`, which is caught...
Hi, do you plan to include a concept of "confidence"? See http://database.oxfordjournals.org/content/2015/bav043.long and https://github.com/BgeeDB/confidence-information-ontology