Farzaneh Najafi

Omission times are logged incorrectly by 1 frame

13

**Describe the bug** The time assigned to omissions in the log is off by one frame. **To Reproduce & Expected Behavior** Compute flash-omission interval, i.e. the interval between the flash...

merging my branch (which is already up to date with master) with master.

Session_id: 1000439105 Experiment_id: 1000744370 1000744376 1000744365 ``` import visual_behavior.data_access.loading as loading from visual_behavior.ophys.response_analysis.response_analysis import ResponseAnalysis ophys_experiment_id = 1000744365 dataset = loading.get_ophys_dataset(ophys_experiment_id) analysis = ResponseAnalysis(dataset) print('shape of omission_response trace: {}'.format(analysis.omission_response_df.iloc[0]['trace'].shape)) print('')...

omitted flashes: repeated time values, also consecutive!

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@dougollerenshaw Hi, I am looking at the omitted flashes of session_id : 814281477 Two issues: 1) two of the omitted flashes are repeated in the start times below (check the...

which image is the changed image

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@matchings @jeromelecoq Hil I am looking at dataset.stimulus_table, and I have access to image names. How do I figure out which image is the changed image? I remember seeing this...

error in foraging.data_to_change_detection_core

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@jeromelecoq session_id: 855711263 experiment: 856123117 (mesoscope session ; The workflow for the experiment is QC). I get the error below when running the convert code. Any thoughts? File "", line...

"stage" is missing from metadata

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@wbwakeman @samiamseid @jeromelecoq Hi; Is there a reason/ fix for the following problem? session_id : 841303580 experiment_ids : [841624549, 841624552,841624554, 841624556, 841624560, 841624564, 841624569, 841624576] error: "stage" is missing from...

allensdk pkl file

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@nicain @wbwakeman Hi; I am trying the allensdk code for finding the pkl file: api = behavior_ophys_api.BehaviorOphysLimsApi(lims_data['experiment_id'][0]) stimulus_pkl_path = api.get_behavior_stimulus_file() the code above fails (see below for the error). But...

ophys frames : time of the frame onset?

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@matchings @jeromelecoq I'd like to know if the values in ophys_frame indicate the time at the onset of a frame? the time at the middle of a frame? or the...