Farshad Farshidfar

Error with getSeq from opened fasta file (Rsamtools 2.0.2)

7

Hi, I am using Rsamtools 2.0.2, and I have faced an issue on reading sequences from fasta files. My issue is similar to https://github.com/Bioconductor/Rsamtools/issues/5 , but not exactly. When I...

### Description of the bug During running sarek on a tumor vs normal analysis, I get the following error message when BWAMEM2 step is completed and then the run halts....

Failure in starting the annotation process for a hg19 VCF file

1

**Describe the bug** When a new VCF file is uploaded (created in hg19), the annotation process fails with the following error message: ``` Upload Failure This is often caused by...