fanying2015

inconsistency with annotatePeak

2

Dear GuangChuang, Thank you for making the convenient and powerful package. In one example I found inconsistency 'annotation' and mapped gene in the annotatepeak output. In the example attached, the...

reproducing result for pbmc

2

Thank you for sharing the script and the input pbmc_data.h5ad. I was able to reproduce the good performance with the script TAPE_realbulk.ipynb. However, when I extracted the input training and...

Question on gene filtering for correlation between malignant cell expression and query cell type fraction

3

Hi Tinyi, Thank you for providing the nice tool and tutorials! I'm also interested in correlation between malignant cell expression and query cell type fraction. Could you provide the scripts...

question on embedded learning

2

Hi Tinyi, I have another question for embedded learning. For instance, if I get eta.post learned from one data set, is it possible to apply it directly to another independent...