exeter-matthew-wakeling

Ok, I have tried running the software with a mask at the count stage. The commands have been: ``` kevlar count --memory 60000M b37_mask.ct Escherichia_coli_str_k_12_substr_mg1655.ASM584v2.dna.toplevel.fa.gz UniVec.fasta human_g1k_v37.fasta kevlar count --memory...

That's likely true, and that's a good check. However, there are reasons why unpredictable temporary file names are recommended that are beyond my current ability to think about right now,...

Oh, it's not enough to check for symlinks either, because hard links will do the same thing too.