Evan Rees

Ah, I see this is part of the **excluding those dependencies that have licenses.** section. I resolved this by `conda install -c bioconda eggnog-mapper -y` and re-running. Enumerating these (`dependencies...

Scratch that, it appears `eggnogg-mapper` requires python 2.7 for the conda installation _and_ is not up-to-date with the argparse parser in `download_eggnogg_data.py`. It appears they have commented this out on...

Simply cloning, installing dependencies and running `python main.py` fails. Pinning dependencies may make this more stable. ```bash (gpt-plugins) ➜ plugins-quickstart git:(main) python main.py Traceback (most recent call last): File "/Users/rees/plugins-quickstart/main.py",...

I gave your code a try as well and this still resulted in the error. The error seems to be a result of using `quart-cors 0.2.0` rather than `quart-cors 0.6.0`...

Hi Jason, sorry for the late response. I have not investigated this deeply, but it looks like you should be able to pin pandas to stay within version 1.1 and...

NOTE: These are both input and outputs paths. If the paths do not exist, `autometa-kmers` will write the respective files to the specified paths.

Also to double check--What is the minimum diamond version corresponding to the availability of the `--taxonmap` and `--taxonnodes` parameters? The `diamond blastp` parameters? I think it also relevant to mention,...

Hello Rajnish, thank you for getting involved. I see you have submitted a pull request (#307), thanks so much! Generally we prefer new changes be pushed to the `dev` branch...

Reminder: When these files are moved, any paths or links in the documentation will also need to be updated.

Yes, this is mentioned in readthedocs. They have put together [a guide to do just this](https://docs.readthedocs.io/en/stable/guides/migrate-rest-myst.html)