Eva María Esquinas Román

icon company CiMUS icon location Santiago de Compostela, Spain icon location Health Biologist & Bioinformatician | Predoctoral researcher at CiMUS (Santiago de Compostela, Spain)

Results 4 issues of Eva María Esquinas Román

How to adjust by multiple variables using ComBat-Seq?

3 comment

Dear @zhangyuqing , I am trying to adjust my RNA data using ComBat-Seq since I realised that there are 3 batches that I need to adjust for: - Place (2...

Several warnings using the test-data

Dear Yi Zhong (@yizhong), After trying to run your tool and checked the opened/closed issues on GitHub while I was trying to solve why I was getting some errors/warnings, I...

Many genes with padj=NaN despite removing low-expressed genes

Dear Yi Zhong (@yizhong), I am trying to use `Ribodiff` with 6 samples of RNA-seq and 6 samples of Ribo-Seq (unpaired data), with 30560 genes. When I run the tool...

Problems trying to generate a kernel density plot with more than 2 genes

I want to generate a Kernel Density plot with my scRNAseq data for a particular list of genes. The [vignette ](https://www.bioconductor.org/packages/release/bioc/vignettes/Nebulosa/inst/doc/nebulosa_seurat.html) of this package shows you an example plotting the...