Eric Tvedte

We've added some memory stats printouts that can be triggered by running `fcs.py --debug`. This might help to clarify any issues you are having. Hopefully with your adjusted configuration and...

Hello, Can you post the exact commands and input you used for FCS-adaptor screening and subsequent cleaning? By "output from FCS-adaptor as an input to FCS-GX" I am assuming you...

Can you forward the email from the NCBI submissions team to [email protected]?

Hi Ben, Sorry this isn't working as expected. Catching up with the previous communications... If you are running FCS-adaptor on your own, the resulting fcs_adaptor_report.txt should have one row per...

Are you using Docker or Singularity? `fcs.py` should be able to handle both formats. I don't recognize this error message in the current code. Will continue to look. In the...

OK, you're using Docker. Can you verify that the version in the docker image is up-to-date when running `fcs.py` commands? It should be v0.5.0. Also, please try using the example...

@Hannah1746 we are not aware of any issues with splitting vs. masking in the current release. Please verify that you are using the v0.5.0 release. It would be helpful if...

There is a new FCS v0.5.4 release that can be tested. Make sure you are using the latest release when screening/cleaning genomes. There weren't any changes relevant to the content...

Hello, The exact set of adaptors isn't documented yet, but you can look at sequences with 'gnl|uv|NGB' prefixes at https://www.ncbi.nlm.nih.gov/tools/vecscreen/uvcurrent/ to get a sense of what's included, and then search...

Hello, Apologies for the delayed response. We currently have a work ticket documenting this issue and will update this GitHub issue when we have a fix in place. For the...