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@prihoda Thank you for your response Yes this file sample1_deepbgc_prepare_result.tsv resulted from deepbgc prepare command. It actually contain sequence id column and in_cluster column but in_cluster column has 0 in...

Thank you I will try it في السبت، ٢١ مايو ٢٠٢٢ ٨:٥٥ م David Příhoda ***@***.***> كتب: > Hi @esraagithub if that file contains > just BGC samples, you can...

thank you, i tried it and it worked well but i get another error in the next step "training the classifier" raise ValueError('No overlap found between classes and samples. Classes...

@vcepeda thank you for your quick reply yes i used the example in the readme file and get that error python3 go_metacompass.py -r tutorial/Candidatus_Carsonella_ruddii_HT_Thao2000.fasta -P tutorial/thao2000.1.fq,tutorial/thao2000.2.fq -o example1_outpt -m 3...

> I ran into the same problem. Commenting out > > ``` > if not notimestamps: > cmd += " -T" > ``` > > in `go_metacompass.py` solved it for...

when i tried to do stage-2 on command line. i got this error: File "pandas/_libs/index.pyx", line 136, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/index.pyx", line 163, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/hashtable_class_helper.pxi", line 5198, in...

> > Hi, > > Is column 'CellNumber' in your meta-data-online.txt empty? Did you try to run both stageone and stagetwo locally using the latest version of args_oap (>3.0)? >...

**Metadata** for stage one doesn't contain Cell number because i don't now cell number in this metagenomic data. **Metadata_online** for stage two has Cell number Should i add 'cell number'...

-m Metadata_online.txt which which i attached its screenshot above في الأربعاء، ٢٤ أغسطس ٢٠٢٢ ٩:٥٠ ص Xi Chen ***@***.***> كتب: > Should i add 'cell number' column in the first...

I noticed that my metadata_online.txt have 'cell number' column in the second row not the title row It was created from the first step in this format. When i fixed...