Young
Young
I have an evil plan to create this dockerfile to make downloading files from NCBI for tests easier. This container includes NCBI's datasets and dataformat. Pull Request (PR) checklist: -...
I didn't change the dockerfile much. I updated to jammy and added some tests. Pull Request (PR) checklist: - [X] Include a description of what is in this pull request...
### What tool are you looking for and why? This would be useful to put in a container : https://github.com/jodyphelan/TBProfiler It doesn't look like the authors have created a container....
This is a condensed summary of an email chain that I was involved in. IRMA v1.0.2 has memory issues when using it for SARS-CoV-2. It _should_ be fine for flu....
This should actually be pretty straight forward. Just a small little readme for each tool. Then update dockerhub to have the readme for the tool instead of the main repo...
Because my free time is limited, I don't know how many currently existing containers will get a github actions workflow. Moving forward, however, each container should come with some sort...
### Contact Details [email protected] ### What container needs an update? Pilon version 1.24 is out. I created a dockerfile for it and was going to update the repo here, but...
### Description of bug ivar trim is listed as having a search pattern of ```yaml ivar/trim: contents: Number of references num_lines: 8 ``` which I imagine is from stdout as...
I've been reading through the documentation for POLCA, and I want to know what the `Consensus QV` metric means. It seems to get higher with each polishing round. Is there...
I like clinker for visualizing synteny in plasmids. There is a problem with plasmid sequences, however, in that they don't always start at the same position. Bacteria chromosomes are rotated...