ericgonzalezs

It is a long file Starts like this: [M::ha_analyze_count] lowest: count[139] = 63492 [M::ha_analyze_count] highest: count[4095] = 92450 [M::ha_hist_line] 2: ****************************************************************************************************> 204947280 [M::ha_hist_line] 3: ****************************************************************************************************> 258505393 [M::ha_hist_line] 4: ****************************************************************************************************> 272395850...

Yes, what makes me ask you, is that I have another data set with even more low coverage reads (6x) and Hifiasm was able to finish the work, producing the...

I guess it is relatively good. The N50 for Hap1 is 96.20 kp with a total assembly of 2.3 Gb and for Hap2 is 110.56 kb with a total assembly...

Many thanks for your answers. I think that could be useful to have something working on low coverage HiFi assemblies. But It is also clear that with higher coverage we...

Thanks!

I am having the same problem. An old version gave me the size I was expecting (I am sorry I don't know the version, probably a version from 2022 ),...

It worked, many thanks!

Many thanks! For our species, heterozygous individuals typically have values around 2.5%, whereas this one has only 0.2%. These measurements were taken with GenomeScope using HiFi reads. It might be...

I ran hifiasm 0.24.0-r702 I ran it without the -l0 option. Using HiFi, Hi-C, and nanopore reads, the software determined the following thresholds: [M::purge_dups] homozygous read coverage threshold: 25 [M::purge_dups]...

Sure, the N50 and the total assembly length for the hifiasm 0.24.0-r702 hifi, nanopore and hi-c assembly is: ``` N50 T lenght H1: 81.50 Mb 3.25 Gb H2: 33.94 Mb...