Henry Webel

I found an okay workaround for me, however I still wonder if it would be feasible to implement something similar to [`parse_known_args`](https://github.com/python/cpython/blob/7b3cf3a2884b130c519fbe271e4d2a762248c2a0/Lib/argparse.py#L1832) in the papermill parser (I will have to...

If the paremeter check is to be implemented, it might go here: https://github.com/nteract/papermill/blob/76906a882bb5b3e719ad113c7b2447e0ddffb2c7/papermill/parameterize.py#L92-L106 So for the help function the source of the parameters cell is read: https://github.com/nteract/papermill/blob/76906a882bb5b3e719ad113c7b2447e0ddffb2c7/papermill/inspection.py#L76-L92 and there `_infer_parameters`...

Maybe add a hint on error due to set default values? If a notebook has a default and one sets the parameter using the CLI, the error might not be...

So the feature would be to implement logging based on the file ending: `notebook.hmtl` would need to run `--to html` ? https://github.com/snakemake/snakemake/blob/11d4dc88598ffb901450bd4e076b91f4e27d37b0/snakemake/notebook.py#L76-L98 Options: ``` # from jupyter nbconvert help text:...

I also use papermill before. I find it unfortunate that missspecified parameters (see https://github.com/nteract/papermill/issues/667) are not catched. Sometimes I want to overwrite defaults with snakemake and when I then make...

I also cannot fix this error buy upgrading to a newer snakemake version in one of my problems. Maybe the metadata is persistent (so the long hash was created once,...

So my error is related to a file linked in the metadata which is not found: ``` Error recording metadata for finished job ([WinError 3] The system cannot find the...

So how I ran into the error on Windows: 1. Execution of the workflow works totally fine for the first time 2. Change some input file of a rule (not...

So on Windows, somehow snakemake cannot overwrite metadata of previously created jobs (even using the `-f` flag). So I have to delete the `snakemake\.metadata` if I want to re-run a...

I forked the [repository](https://github.com/cphbiosciencephd/vscode-binder) and tried to start it using [mybinder (direk-link)](https://mybinder.org/v2/gh/cphbiosciencephd/vscode-binder/HEAD). and now I see errors: ``` Traceback (most recent call last): File "/srv/conda/envs/notebook/share/code-server/extensions/ms-python.python-2022.10.0/pythonFiles/run-jedi-language-server.py", line 9, in from jedi_language_server.cli...