Eugen Netz
Eugen Netz
Update here, regarding MzIdentML 1.2.0: `De novo search | MS:1001010 | De novo sequencing of peptides has been performed, meaning that 0 . . n relationships from peptides to proteins...
One thing I noted, independent from the changes in this PR, when converting XL-MS idXML files: The original idXML is 2.77 GB, after convertig to OMS and back it is...
`MOD:00756` is `4-hydroxy-D-valine` with a mass of `115.063329` from the PSI-MOD
I only encountered this once, years ago, and currently don't have the right system setup to test or fix it.
I contacted someone from KNIME and he confirmed that the problem should be solvable from their side. All we can do now is wait.
I tried to see what options there are, and it seems making random colored boxes with rst is not trivial. To keep it simple, we can use the "Note" boxes...
@jpfeuffer thanks for that link! I tried to find a way to define custom admonitions, but couldn't find an example before, so I tried the Note default.
also about jupyter compatibility, I didn't expect this, using binder: It turns into simple plain text with Note above (example from a page where a Note was already used before),...
as Timo already noticed, but didn't explain about his suggested parameters: The main issue might be `start_intensity_check`. The algorithm assumes subsequent peaks in an isotopic pattern have a lower intensity,...
first draft in #7209 TODO: 1. agree on comment symbol. I used '#' for now, but also noticed that e.g. `InternalCalibration` uses '#' in it's input files for headings or...