Emrah Kırdök issues

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                                            Emrah Kırdök

Difference in execution times

Hi, Thank you for this great tool. I tried to use the low memory option in krakenuniq and I have mixed results. First I used version 1.0.3 and I specified...

How to run only krakenuniq part of the pipeline? (A specific option in the config file is needed)

For a specific project, I only need to run krakenuniq part of the pipeline. Specifically, I want to run `Cutadapt_Adapter_Trimming`, `KrakenUniq`, `Filter_KrakenUniq_Output`, and `KrakenUniq_AbundanceMatrix` rules. However the pipeline runs krakenuniq...