emilyhyde

Naming Output TSV File

1

Is there a way to specify the desired name of the output tsv file? I am running these on multiple sets of genomes and would like to specify a name...

Multiple Hits per Gene

1

Hello! I am running KoFamScan on a large dataset and I am getting 10+ hits on each gene (predicted with Prodigal) almost universally across my data. From the documentation, I...

Default Threads - createDB Error

1

From my understanding, the default threads for mmseqs is max threads. Because of this, I am working through a clustering protocol for a DB with 17K seqs and creating a...

GPU required?

1

Hello, Thanks so much for this great tool, we are preparing a few tests to run this with but I am wanting to determine compatibility. Does plmc require GPUs? Emily