emiglietta

When making the .html files, the images inserted in line with the text don't show properly  Although in the preview of VS Code, they appear normally: 

Done! now inline images are display correctly!

I put the instructions in internal-use/docs/instructions.md

sounds good! just one question, all these modifications should be done in the Build modernization branch? Also, should we delete the BS_simplification branch? since it is already merged to Build...

I have checked that this behavior is maintained in CP 4.2.6 (from source)and the 4.2.3 build, but not on 4.2.1 (all on Mac M2). Note that 4.2.3 (08-10-2022) was released...

That minor change in the pipeline fixed the bug for me. The only minor drawback is that the colors asigned to each of the channels in the .properties file are...

Apparently what happens is that Docker containers ungracefully crash when you exceed the CPU and/or memory usage available for Docker, so no .npy file is created and the module crashes...

> Type 3: Using all pixels per object (Custom plugin developed by Esteban, one mask for each object) Just to clarify, I only implemented this for the Rank-Weighed Colocalization metric...

I managed to get this error consistently without it failing at any point (except for the freezing during 'post-processing'). When I analyzed just a few image sets (up to 20),...

Thanks for the suggestion @bethac07! I tried running the pipeline with the "always skip failing images" option ON, but the result was the same: the pipeline got stuck in "post-processing"...