Joseph Elsherbini

Similar issue here. Pressing enter after a pipe rarely creates a newline for me and instead either suggests a variable or performs a find on a variable in my file....

This is going to be the blind leading the blind, so if someone else can chime in that'd be great. But what happens when you open the command prompt (F1)...

Hello, thanks for opening the issue! It looks like the `filtered_blocks` variable may have been empty. Looking at the code, it might mean that the alignment was empty. I'm wondering...

Hello, The parser as written expects the fasta file generated from prodigal header to look something like this: `>10N.222.54.F5_contig1_1 # 79 # 1257 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.448` It expects the...

That would be a good workaround for the moment. I will think about a more robust solution for parsing the prodigal output and moving things though the pipeline.

Hi Yun, Can you confim that you have a file called `proc/sulfolobus/0.concatenated_orfs.faa `, and post the output of the following commands? ``` head proc/sulfolobus/0.concatenated_orfs.faa grep -c ">" proc/sulfolobus/0.concatenated_orfs.faa ```

Manually downgrading to libffi version 3.3 allowed me to launch radian. Not sure if the conda-forge package needs it's dependencies changed, or if rchitect could use the libffi.so.8 API with...

Agreed that it'd be nice to have the `pairwise_` family of functions not drop zeros. You could work around it in this case by using `complete()` https://tidyr.tidyverse.org/reference/complete.html ``` dat %...