Eli Levy Karin
Eli Levy Karin
Hi, In the simplest case, where the target database is a protein database, what you wrote holds. If the target database is a profile database, then the search will flip...
Hi, I am not the developer of EukRep but I have used it myself. As far as I know, they tried to configure their tool to be lenient. I.e., to...
Hi Ugur, Thank you for taking the time to look up what we did in the manuscript. In our manuscript we analyzed sequences that were known to contain eukaryotic sequence...
Hi Ugur, You raise some very reasonable questions but I think some of them could perhaps be referred to the developers of the other tools. One thing you might want...
Could you please send us the log files produced during the run? Thank you!
Hi, Thank you for using MetaEuk. From the files in your directory it seems that indeed the nodes file is missing as the software complains. How did you obtain that...
> Thank you, that worked. A final question, my assembly has 23000 contigs, however only 12000 have been tax annotated by the taxtocontig command, that means that metaeuk can not...
The number is indeed a bit ridiculous. However, it should not affect the run - it is just some printout that is not very useful in some cases (it is...
Hi, I am very sorry for the late reply. This issue somehow escaped me. What you suggest sounds reasonable. Basically, it is a way to pre-filter the target database and...
Hi Timothee, Thank you for the comment. I am marking this as a future feature to develop. Right now it is not possible to impose that proteins start with a...